Latest deals
Insights
When to book
FAQs
Reviews
Price Alerts

Cheap flights from Manila to Kota Kinabalu from $45

This is the cheapest one-way flight price found by a momondo user in the last 72 hours by searching for a flight from Manila to Kota Kinabalu departing on 3/28. Fares may change, and may not be available for all flights or travel dates. Click the price to refresh the search for this deal.
1 adult
0 bags

Deals available from 900+ travel sites.

"This year, momondo is the #1 place for airfares on the internet."
Save money when you book flights with momondo
Big names and deals
Big names and deals
Search 100s of travel sites to compare prices.
Filter for what you want
Filter for what you want
Free Wi-Fi? Stopover? Instantly customize your results.
Trusted and free
Trusted and free
We’re completely free to use - no hidden charges or fees.
Price Alerts
Price Alerts
Not ready to book? to track prices.

Find the cheapest flights from Manila to Kota Kinabalu

Cheap round-trip flights

These are some of the best round-trip flight deals from Manila to Kota Kinabalu that have been recently found on momondo from popular airlines, departing in the coming months.

Cheap one-way flights

Flying one-way? These are some of the best deals recently discovered on momondo for flights from Manila to Kota Kinabalu.

Cheap last minute flights

Planning a quick getaway from Manila to Kota Kinabalu? These are the last-minute flight deals available now.

Cheap direct flights

If you prefer a non-stop journey, check out our latest direct flight deals to Kota Kinabalu, so you can enjoy a seamless trip without layovers.

Cheap bus & train deals from Manila to Kota Kinabalu

Find recent round-trip train or bus tickets from Manila to Kota Kinabalu.

All round-trip flight deals to Kota Kinabalu

The cheapest plane tickets to Kota Kinabalu found on KAYAK recently.
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$88Philippines AirAsia
Find Deal
Fri, Feb 14 - Mon, Feb 17
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$115Philippines AirAsia
Find Deal
Sun, Jan 5 - Mon, Jan 6
6:30 am - 5:45 pmMNL-BKI
11h 15m1 stop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
Fri, Feb 14 - Mon, Feb 17
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:45 pm - 5:30 amBKI-MNL
10h 45m1 stop
Fri, Jan 3 - Fri, Jan 10
6:30 am - 5:45 pmMNL-BKI
11h 15m1 stop
12:30 pm - 6:30 pmBKI-MNL
30h 00m1 stop
$226Scoot
Find Deal
Fri, Feb 14 - Mon, Feb 17
6:50 am - 7:35 pmMNL-BKI
12h 45m2 stops
9:45 pm - 2:05 pmBKI-MNL
16h 20m1 stop
$481Malaysia Airlines
Find Deal
Mon, Apr 7 - Mon, Apr 7
11:20 pm - 12:30 amMNL-BKI
25h 10m1 stop
1:30 am - 10:20 pmBKI-MNL
20h 50m1 stop
$605Jeju Air
Find Deal
Sun, Mar 2 - Sat, Mar 8
6:30 am - 7:05 pmMNL-BKI
12h 35m1 stop
8:05 pm - 5:30 amBKI-MNL
9h 25m1 stop
$620Scoot
Find Deal
Sun, Jan 5 - Sun, Jan 12
11:20 pm - 12:30 amMNL-BKI
25h 10m1 stop
1:30 am - 10:20 pmBKI-MNL
20h 50m1 stop
$993Jeju Air
Find Deal
Sun, Jan 5 - Sat, Jan 11
6:50 am - 6:55 pmMNL-BKI
12h 05m2 stops
9:10 pm - 2:05 pmBKI-MNL
16h 55m2 stops
$1,730Malaysia Airlines
Find Deal
Mon, Apr 7 - Mon, Apr 7
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
$45Philippines AirAsia
Find Deal
Fri, Mar 28
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
$53Philippines AirAsia
Find Deal
Sun, Dec 1
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
$57Philippines AirAsia
Find Deal
Mon, Dec 2
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
$65Philippines AirAsia
Find Deal
Fri, Nov 29
7:30 pm - 7:05 pmMNL-BKI
23h 35m1 stop
$78Scoot
Find Deal
Tue, Dec 3
7:30 pm - 7:05 pmMNL-BKI
23h 35m1 stop
$79Scoot
Find Deal
Sat, Nov 30
6:30 am - 10:15 pmMNL-BKI
15h 45m2 stops
Tue, Nov 26
7:30 pm - 10:15 pmMNL-BKI
26h 45m2 stops
Fri, Dec 6
1:10 am - 11:15 amMNL-BKI
10h 05m1 stop
$111AirAsia
Find Deal
Mon, Dec 2
1:10 am - 9:35 amMNL-BKI
8h 25m1 stop
$127AirAsia
Find Deal
Tue, Dec 3
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$171Philippines AirAsia
Find Deal
Mon, Nov 25 - Wed, Nov 27
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$180Philippines AirAsia
Find Deal
Sun, Nov 24 - Wed, Nov 27
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
4:35 pm - 5:40 amBKI-MNL
13h 05m1 stop
Mon, Nov 25 - Tue, Nov 26
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:25 pm - 5:10 amBKI-MNL
10h 45m1 stop
Mon, Nov 25 - Wed, Nov 27
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
4:35 pm - 5:40 amBKI-MNL
13h 05m1 stop
Sun, Nov 24 - Tue, Nov 26
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:25 pm - 5:10 amBKI-MNL
10h 45m1 stop
Sun, Nov 24 - Wed, Nov 27
7:00 pm - 7:05 pmMNL-BKI
24h 05m1 stop
8:05 pm - 10:50 pmBKI-MNL
26h 45m1 stop
$404Singapore Airlines
Find Deal
Sat, Nov 23 - Wed, Nov 27
6:40 am - 5:05 pmMNL-BKI
10h 25m1 stop
6:50 am - 9:30 pmBKI-MNL
14h 40m2 stops
$950Malaysia Airlines
Find Deal
Sat, Nov 23 - Wed, Nov 27
11:20 pm - 12:30 amMNL-BKI
25h 10m1 stop
1:30 am - 10:20 pmBKI-MNL
20h 50m1 stop
$1,009Jeju Air
Find Deal
Sun, Nov 24 - Tue, Nov 26
11:20 pm - 12:30 amMNL-BKI
25h 10m1 stop
1:30 am - 10:20 pmBKI-MNL
20h 50m1 stop
$1,022Jeju Air
Find Deal
Sat, Nov 23 - Tue, Nov 26
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$88Philippines AirAsia
Find Deal
Fri, Feb 14 - Mon, Feb 17
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$115Philippines AirAsia
Find Deal
Sun, Jan 5 - Mon, Jan 6
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$133Philippines AirAsia
Find Deal
Fri, Jan 3 - Fri, Jan 10

Philippines AirAsia flights from Manila to Kota Kinabalu

Our best Philippines AirAsia deals on Manila to Kota Kinabalu flight tickets
Philippines AirAsia
Feb 14
MNL4:15 pmManila Ninoy Aquino Intl
2h 15m
BKI6:30 pmKota Kinabalu
Feb 17
BKI6:55 pmKota Kinabalu
2h 00m
MNL8:55 pmManila Ninoy Aquino Intl
Philippines AirAsia
Jan 5
MNL4:15 pmManila Ninoy Aquino Intl
2h 15m
BKI6:30 pmKota Kinabalu
Jan 6
BKI6:55 pmKota Kinabalu
2h 00m
MNL8:55 pmManila Ninoy Aquino Intl
Philippines AirAsia
Jan 3
MNL4:15 pmManila Ninoy Aquino Intl
2h 15m
BKI6:30 pmKota Kinabalu
Jan 10
BKI6:55 pmKota Kinabalu
2h 00m
MNL8:55 pmManila Ninoy Aquino Intl

Scoot flights from Manila to Kota Kinabalu

Our best Scoot deals on Manila to Kota Kinabalu flight tickets
Scoot
Feb 14
MNL6:30 amManila Ninoy Aquino Intl
11h 15m
1 stop
BKI5:45 pmKota Kinabalu
Feb 17
BKI12:30 pmKota Kinabalu
30h 00m
1 stop
MNL6:30 pmManila Ninoy Aquino Intl
Scoot
Jan 5
MNL6:30 amManila Ninoy Aquino Intl
12h 35m
1 stop
BKI7:05 pmKota Kinabalu
Jan 12
BKI8:05 pmKota Kinabalu
9h 25m
1 stop
MNL5:30 amManila Ninoy Aquino Intl

See travel insights to Kota Kinabalu from

How to get the cheapest flight ticket from Manila to Kota Kinabalu

Look no further. We've gone through all the searches for this route on momondo so you have the important information and insights to find the cheapest flight ticket for your trip

What is the cheapest month to fly to Kota Kinabalu?

In general, January is the cheapest month to fly from Manila to Kota Kinabalu. Due to it being the ‘off-season’ during this time, you can expect flight prices to be around $93. The month of November is another great option to travel to Kota Kinabalu, with average flight prices from Manila averaging around $100.

What is the cheapest day to depart on your flight to Kota Kinabalu?

According to our data, Tuesday is the cheapest day to fly to Kota Kinabalu from Manila. The lowest ticket price found for a Tuesday departure recently was $0. Keep in mind that prices can always vary depending on your route and whether or not you are flying domestic or international. Flights from Manila to Kota Kinabalu on a Thursday will generally be more expensive and average around $136. Keep in mind that these prices on both days could fluctuate depending on the season and the demand.

What is the cheapest time of day to depart on your flight to Kota Kinabalu?

According to our data, the cheapest time of day to fly to Kota Kinabalu is in the morning. momondo users have found flights departing from Manila to Kota Kinabalu in the morning for as low as $0. Keep in mind that these prices may fluctuate based on what airline you choose and the time of year you plan to travel. Flights to Kota Kinabalu are more costly in the evening, with an average ticket price of $132. Departure times in the evening fall within the peak daily travel times, which is why tickets can be more expensive.

What is the cheapest Manila Ninoy Aquino Intl to Kota Kinabalu flight route?

Fly from Manila Ninoy Aquino Intl to Kota Kinabalu for the best Manila Ninoy Aquino Intl - Kota Kinabalu flight prices

How far in advance should I book a flight to Kota Kinabalu?

In general, most travelers find the cheapest time to book a flight to Kota Kinabalu is about 39 days prior to their departure date when tickets on average are $110. Keep in mind that you might be able to find cheaper flights to Kota Kinabalu at any time. In fact, our users found flights for as low as $82 in the past 72 hours.

What cabin class options are available on Manila Ninoy Aquino Intl to Kota Kinabalu flights?

There are 1 cabin classes available to choose from on Manila Ninoy Aquino Intl to Kota Kinabalu flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Can stopping save me money on Manila to Kota Kinabalu flights?

You could potentially save up to 73% on your flight if you consider stops on a Manila to Kota Kinabalu flight.

How have Manila to Kota Kinabalu flight prices changed over time?

As of November 2024, prices for Manila to Kota Kinabalu flights are approximately 62% more expensive when compared to flights at the same time last year.

When to book flights from Manila to Kota Kinabalu

Are you open to changing your travel dates? Check out the ideal times to fly from Manila to Kota Kinabalu according to our flight data. Find out which month and days have the cheapest flights.
Estimated round-trip price

Cheap Manila to Kota Kinabalu (MNL to BKI) flight deals and tips

Find info about flight duration, direct flights, and airports for your flight from Manila to Kota Kinabalu

Best Price Found

$45

Fastest flight time

2h 15m

Direct flights

Mon, Tue, Thu and Sat

Airports in Kota Kinabalu

1 airport
The best one-way flight to Kota Kinabalu from Manila in the past 72 hours is $45. The best round-trip flight deal from Manila to Kota Kinabalu found on momondo in the last 72 hours is $88.
The fastest flight from Manila to Kota Kinabalu takes 2h 15m
Direct flights go from Manila to Kota Kinabalu on Monday, Tuesday, Thursday and Saturday. The only airline offering direct flights is Philippines AirAsia.
There is 1 airport near Kota Kinabalu: Kota Kinabalu (BKI)

  • How far is Manila Ninoy Aquino Intl to Kota Kinabalu by plane?

    The straight-line distance from Manila Ninoy Aquino Intl to Kota Kinabalu is 682.5 mi. Typically, this will take 2h 15m by plane in normal conditions.

  • When did momondo last update prices for flights from Manila Ninoy Aquino Intl Airport to Kota Kinabalu Airport?

    Prices for flights from Manila Ninoy Aquino Intl Airport to Kota Kinabalu Airport are updated daily.

  • How many operators does momondo search for flights from Manila Ninoy Aquino Intl Airport to Kota Kinabalu Airport?

  • How old do you have to be to fly from Manila Ninoy Aquino Intl Airport to Kota Kinabalu Airport?

    The minimum age a child must be to fly alone is five but airlines that offer an unaccompanied minor (UNMR) service will have their own age restrictions, including rules around flight length, timings, and stopovers. We always recommend checking with the individual airline you are booking with to travel from Manila Ninoy Aquino Intl Airport to Kota Kinabalu Airport.

  • What documentation or ID do you need to fly to Kota Kinabalu Airport?

    The required travel and health documents for your Kota Kinabalu Airport trip may vary depending on your itinerary and personal circumstances. As a general rule, you should carry multiple documents, including a national ID card or driver's license and a passport valid for six months after your intended arrival at Kota Kinabalu Airport. We recommend that you seek guidance from your airline or a reliable third party such as IATA.

  • What is the most popular plane model from Manila to Kota Kinabalu?

  • What is the most popular airline from Manila to Kota Kinabalu?


Best airlines flying from Manila to Kota Kinabalu

Compare and see reviews for airlines that fly from Manila to Kota Kinabalu with momondo
Airline
Rating
Free Cancellation
Price
Cebu PacificPriceFrom $70Free CancellationRating
6.9
200 reviews
Search Cebu Pacific flights
Philippines AirAsiaPriceFrom $81Free CancellationRating
6.5
128 reviews
Search Philippines AirAsia flights
  • Philippines AirAsia Flights From Manila to Kota Kinabalu

    Philippines AirAsia is one of the most popular airlines flying from Manila to Kota Kinabalu, operating 4 flights/week on average for this route. A good Philippines AirAsia flight deal for Manila to Kota Kinabalu starts from $81 round-trip, up to an average price of $119. Our users have rated Philippines AirAsia at 6.5/10.


Why use momondo?

Why should I use momondo to find a flight deal from Manila to Kota Kinabalu?

To find the flight that best suits your needs, momondo gathers a range of flights from a large pool of different airlines and agents; you can then use our insights and filters to find and book the right flight to Kota Kinabalu from Manila.

Can I find flights from Manila to Kota Kinabalu with flexible booking policies on momondo?

Yes. All flights to Kota Kinabalu from Manila on momondo can be compared and filtered by various policies on offer, including flexible booking.

How can momondo help me find flights from Manila to Kota Kinabalu?

Once you have performed a search in the form on the page, momondo provides useful filters and insights. We can show you the cheapest days and times to fly as well as help filter your options to help you make an informed choice when booking flights to Kota Kinabalu from Manila.

I’m not ready to book a flight from Manila to Kota Kinabalu right now. Can momondo alert me if prices change?

Price alerts on flights to Kota Kinabalu from Manila are quick and easy to set up on momondo. Simply perform a search and select the price alert feature. It is as simple as that.


An easier way to manage your Kota Kinabalu trip

We make it super easy to schedule, organize and travel with friends or family. Trips is free — and available to use no matter where you book.

Get notified when prices go down

Daily price changes in your inbox - only with Price Alerts.
1 adult
From?
To?
Tue 11/26
Tue 12/3
Email me momondo's favorite deals

Find better results for your trip to Malaysia