Latest deals
Insights
When to book
FAQs
Reviews
Price Alerts

Cheap flights from Manila to Kota Kinabalu from $59

This is the cheapest one-way flight price found by a momondo user in the last 72 hours by searching for a flight from Manila to Kota Kinabalu departing on 1/27. Fares may change, and may not be available for all flights or travel dates. Click the price to refresh the search for this deal.
1 adult
0 bags
"This year, momondo is the #1 place for airfares on the internet."
Save money when you book flights with momondo
Big names and deals
Big names and deals
Search 100s of travel sites to compare prices.
Filter for what you want
Filter for what you want
Free Wi-Fi? Stopover? Instantly customize your results.
Trusted and free
Trusted and free
We’re completely free to use - no hidden charges or fees.
Price Alerts
Price Alerts
Not ready to book? to track prices.

Find the cheapest flights from Manila to Kota Kinabalu

Cheap round-trip flights

These are some of the best round-trip flight deals from Manila to Kota Kinabalu that have been recently found on momondo from popular airlines, departing in the coming months.

Cheap one-way flights

Flying one-way? These are some of the best deals recently discovered on momondo for flights from Manila to Kota Kinabalu.

Cheap last minute flights

Planning a quick getaway from Manila to Kota Kinabalu? These are the last-minute flight deals available now.

Cheap direct flights

If you prefer a non-stop journey, check out our latest direct flight deals to Kota Kinabalu, so you can enjoy a seamless trip without layovers.

Cheap bus & train deals from Manila to Kota Kinabalu

Find recent round-trip train or bus tickets from Manila to Kota Kinabalu.

All round-trip flight deals to Kota Kinabalu

The cheapest plane tickets to Kota Kinabalu found on KAYAK recently.
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$128Philippines AirAsia
Find Deal
Mon, Feb 3 - Fri, Feb 7
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$148Philippines AirAsia
Find Deal
Wed, Jan 29 - Sun, Feb 2
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$149Philippines AirAsia
Find Deal
Wed, Jan 29 - Mon, Feb 3
6:55 am - 8:50 pmMNL-BKI
13h 55m1 stop
1:45 am - 3:55 amBKI-MNL
2h 10mnonstop
Fri, May 16 - Thu, May 29
6:55 am - 11:20 amMNL-BKI
28h 25m1 stop
9:35 pm - 6:35 pmBKI-MNL
21h 00m1 stop
$204Scoot
Find Deal
Fri, May 16 - Fri, May 30
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:45 pm - 6:30 pmBKI-MNL
23h 45m1 stop
Mon, Feb 3 - Fri, Feb 7
6:25 am - 11:40 pmMNL-BKI
17h 15m1 stop
5:20 am - 7:35 pmBKI-MNL
14h 15m1 stop
$345Philippine Airlines
Find Deal
Mon, Jan 13 - Tue, Jan 14
5:40 pm - 2:30 amMNL-BKI
8h 50m1 stop
1:45 am - 10:50 amBKI-MNL
9h 05m1 stop
$382China Southern
Find Deal
Wed, Jan 15 - Tue, Jan 21
5:40 pm - 6:00 pmMNL-BKI
24h 20m1 stop
7:05 pm - 4:35 pmBKI-MNL
21h 30m1 stop
$405China Southern
Find Deal
Wed, Jan 15 - Wed, Jan 22
6:25 am - 6:20 pmMNL-BKI
11h 55m1 stop
7:20 am - 3:15 pmBKI-MNL
7h 55m1 stop
$425Philippine Airlines
Find Deal
Mon, Jan 27 - Fri, Jan 31
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
$59Philippines AirAsia
Find Deal
Mon, Jan 27
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
$61Philippines AirAsia
Find Deal
Mon, Jan 27
8:20 pm - 9:35 amMNL-BKI
13h 15m1 stop
Wed, Jan 22
7:30 pm - 11:30 amMNL-BKI
16h 00m1 stop
$116Scoot
Find Deal
Wed, Feb 5
6:30 am - 5:45 pmMNL-BKI
11h 15m1 stop
$119Scoot
Find Deal
Fri, Feb 7
1:10 am - 9:35 amMNL-BKI
8h 25m1 stop
$123AirAsia
Find Deal
Tue, Jan 21
1:10 am - 10:40 amMNL-BKI
9h 30m1 stop
Tue, Feb 4
1:10 am - 12:25 amMNL-BKI
23h 15m1 stop
$129AirAsia
Find Deal
Wed, Feb 5
6:40 am - 3:20 pmMNL-BKI
8h 40m1 stop
$266Malaysia Airlines
Find Deal
Thu, Jan 23
5:20 pm - 2:10 pmMNL-BKI
20h 50m2 stops
$301Malaysia Airlines
Find Deal
Wed, Jan 22
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$128Philippines AirAsia
Find Deal
Mon, Feb 3 - Fri, Feb 7
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$148Philippines AirAsia
Find Deal
Wed, Jan 29 - Sun, Feb 2
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$149Philippines AirAsia
Find Deal
Wed, Jan 29 - Mon, Feb 3
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$156Philippines AirAsia
Find Deal
Mon, Jan 27 - Fri, Jan 31
4:15 pm - 6:30 pmMNL-BKI
2h 15mnonstop
6:55 pm - 8:55 pmBKI-MNL
2h 00mnonstop
$182Philippines AirAsia
Find Deal
Wed, Jan 15 - Wed, Jan 22

Philippine Airlines flights from Manila to Kota Kinabalu

Our best Philippine Airlines deals on Manila to Kota Kinabalu flight tickets
Philippine Airlines
Jan 13
MNL6:25 amManila Ninoy Aquino Intl
17h 15m
1 stop
BKI11:40 pmKota Kinabalu
Jan 14
BKI5:20 amKota Kinabalu
14h 15m
1 stop
MNL7:35 pmManila Ninoy Aquino Intl
Philippine Airlines
Jan 27
MNL6:25 amManila Ninoy Aquino Intl
11h 55m
1 stop
BKI6:20 pmKota Kinabalu
Jan 31
BKI7:20 amKota Kinabalu
7h 55m
1 stop
MNL3:15 pmManila Ninoy Aquino Intl

Malaysia Airlines flights from Manila to Kota Kinabalu

Our best Malaysia Airlines deals on Manila to Kota Kinabalu flight tickets
Malaysia Airlines
Jun 22
MNL3:05 pmManila Ninoy Aquino Intl
7h 50m
1 stop
BKI10:55 pmKota Kinabalu
Jun 29
BKI5:20 amKota Kinabalu
8h 45m
1 stop
MNL2:05 pmManila Ninoy Aquino Intl
Malaysia Airlines
Jan 15
MNL6:40 amManila Ninoy Aquino Intl
10h 25m
1 stop
BKI5:05 pmKota Kinabalu
Jan 22
BKI12:50 pmKota Kinabalu
23h 30m
2 stops
MNL12:20 pmManila Ninoy Aquino Intl
Malaysia Airlines
Jan 13
MNL6:40 amManila Ninoy Aquino Intl
8h 40m
1 stop
BKI3:20 pmKota Kinabalu
Jan 14
BKI4:25 pmKota Kinabalu
19h 55m
2 stops
MNL12:20 pmManila Ninoy Aquino Intl

See travel insights to Kota Kinabalu from

How to get the cheapest flight ticket from Manila to Kota Kinabalu

Look no further. We've gone through all the searches for this route on momondo so you have the important information and insights to find the cheapest flight ticket for your trip

What is the cheapest month to fly to Kota Kinabalu?

In general, November is the cheapest month to fly from Manila to Kota Kinabalu. Due to it being the ‘off-season’ during this time, you can expect flight prices to be around $100. The month of February is another great option to travel to Kota Kinabalu, with average flight prices from Manila averaging around $108.

What is the cheapest day to depart on your flight to Kota Kinabalu?

According to our data, Monday is the cheapest day to fly to Kota Kinabalu from Manila. The lowest ticket price found for a Monday departure recently was $112. Keep in mind that prices can always vary depending on your route and whether or not you are flying domestic or international. Flights from Manila to Kota Kinabalu on a Saturday will generally be more expensive and average around $147. Keep in mind that these prices on both days could fluctuate depending on the season and the demand.

What is the cheapest time of day to depart on your flight to Kota Kinabalu?

According to our data, the cheapest time of day to fly to Kota Kinabalu is in the afternoon. momondo users have found flights departing from Manila to Kota Kinabalu in the afternoon for as low as $115. Keep in mind that these prices may fluctuate based on what airline you choose and the time of year you plan to travel. Flights to Kota Kinabalu are more costly in the morning, with an average ticket price of $197. Departure times in the morning fall within the peak daily travel times, which is why tickets can be more expensive.

What is the cheapest Manila Ninoy Aquino Intl to Kota Kinabalu flight route?

Fly from Manila Ninoy Aquino Intl to Kota Kinabalu for the best Manila Ninoy Aquino Intl - Kota Kinabalu flight prices

How far in advance should I book a flight to Kota Kinabalu?

In general, most travelers find the cheapest time to book a flight to Kota Kinabalu is about 39 days prior to their departure date when tickets on average are $114. Keep in mind that you might be able to find cheaper flights to Kota Kinabalu at any time. In fact, our users found flights for as low as $82 in the past 72 hours.

What cabin class options are available on Manila Ninoy Aquino Intl to Kota Kinabalu flights?

There are 1 cabin classes available to choose from on Manila Ninoy Aquino Intl to Kota Kinabalu flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Can stopping save me money on Manila to Kota Kinabalu flights?

You could potentially save up to 81% on your flight if you consider stops on a Manila to Kota Kinabalu flight.

How have Manila to Kota Kinabalu flight prices changed over time?

As of January 2025, prices for Manila to Kota Kinabalu flights are approximately 6% more expensive when compared to flights at the same time last year.

When to book flights from Manila to Kota Kinabalu

Are you open to changing your travel dates? Check out the ideal times to fly from Manila to Kota Kinabalu according to our flight data. Find out which month and days have the cheapest flights.
Estimated round-trip price

Cheap Manila to Kota Kinabalu (MNL to BKI) flight deals and tips

Find info about flight duration, direct flights, and airports for your flight from Manila to Kota Kinabalu

Best Price Found

$59

Fastest flight time

2h 15m

Direct flights

Mon, Tue, Thu and Sat

Airports in Kota Kinabalu

1 airport
The best one-way flight to Kota Kinabalu from Manila in the past 72 hours is $59. The best round-trip flight deal from Manila to Kota Kinabalu found on momondo in the last 72 hours is $128.
The fastest flight from Manila to Kota Kinabalu takes 2h 15m
Direct flights go from Manila to Kota Kinabalu on Monday, Tuesday, Thursday and Saturday. The only airline offering direct flights is Philippines AirAsia.
There is 1 airport near Kota Kinabalu: Kota Kinabalu (BKI)

  • How far is Manila Ninoy Aquino Intl to Kota Kinabalu by plane?

    The straight-line distance from Manila Ninoy Aquino Intl to Kota Kinabalu is 682.5 mi. Typically, this will take 2h 15m by plane in normal conditions.

  • When did momondo last update prices for flights from Manila Ninoy Aquino Intl Airport to Kota Kinabalu Airport?

    Prices for flights from Manila Ninoy Aquino Intl Airport to Kota Kinabalu Airport are updated daily.

  • How many operators does momondo search for flights from Manila Ninoy Aquino Intl Airport to Kota Kinabalu Airport?

  • How old do you have to be to fly from Manila Ninoy Aquino Intl Airport to Kota Kinabalu Airport?

    The minimum age a child must be to fly alone is five but airlines that offer an unaccompanied minor (UNMR) service will have their own age restrictions, including rules around flight length, timings, and stopovers. We always recommend checking with the individual airline you are booking with to travel from Manila Ninoy Aquino Intl Airport to Kota Kinabalu Airport.

  • What documentation or ID do you need to fly to Kota Kinabalu Airport?

    The required travel and health documents for your Kota Kinabalu Airport trip may vary depending on your itinerary and personal circumstances. As a general rule, you should carry multiple documents, including a national ID card or driver's license and a passport valid for six months after your intended arrival at Kota Kinabalu Airport. We recommend that you seek guidance from your airline or a reliable third party such as IATA.

  • What is the most popular plane model from Manila to Kota Kinabalu?

  • What is the most popular airline from Manila to Kota Kinabalu?


Best airlines flying from Manila to Kota Kinabalu

Compare and see reviews for airlines that fly from Manila to Kota Kinabalu with momondo
Airline
Rating
Free Cancellation
Price
Philippines AirAsiaPriceFrom $83Free CancellationRating
6.6
121 reviews
Search Philippines AirAsia flights
  • Philippines AirAsia Flights From Manila to Kota Kinabalu

    Philippines AirAsia is one of the most popular airlines flying from Manila to Kota Kinabalu, operating 4 flights/week on average for this route. A good Philippines AirAsia flight deal for Manila to Kota Kinabalu starts from $83 round-trip, up to an average price of $124. Our users have rated Philippines AirAsia at 6.6/10.


Why use momondo?

Why should I use momondo to find a flight deal from Manila to Kota Kinabalu?

To find the flight that best suits your needs, momondo gathers a range of flights from a large pool of different airlines and agents; you can then use our insights and filters to find and book the right flight to Kota Kinabalu from Manila.

Can I find flights from Manila to Kota Kinabalu with flexible booking policies on momondo?

Yes. All flights to Kota Kinabalu from Manila on momondo can be compared and filtered by various policies on offer, including flexible booking.

How can momondo help me find flights from Manila to Kota Kinabalu?

Once you have performed a search in the form on the page, momondo provides useful filters and insights. We can show you the cheapest days and times to fly as well as help filter your options to help you make an informed choice when booking flights to Kota Kinabalu from Manila.

I’m not ready to book a flight from Manila to Kota Kinabalu right now. Can momondo alert me if prices change?

Price alerts on flights to Kota Kinabalu from Manila are quick and easy to set up on momondo. Simply perform a search and select the price alert feature. It is as simple as that.


An easier way to manage your Kota Kinabalu trip

We make it super easy to schedule, organize and travel with friends or family. Trips is free — and available to use no matter where you book.

Get notified when prices go down

Daily price changes in your inbox - only with Price Alerts.
1 adult
From?
To?
Thu 1/9
Thu 1/16
Email me momondo's favorite deals

Find better results for your trip to Malaysia